From 1dbbad1c1d00c41168c71a905af5822d6d708dae Mon Sep 17 00:00:00 2001
From: Brandi Cantarel <brandi.cantarel@utsouthwestern.edu>
Date: Fri, 9 Nov 2018 10:28:59 -0600
Subject: [PATCH] adding header filter_genefusions.pl
---
alignment/filter_genefusions.pl | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/alignment/filter_genefusions.pl b/alignment/filter_genefusions.pl
index 73ff3bd..6dca268 100755
--- a/alignment/filter_genefusions.pl
+++ b/alignment/filter_genefusions.pl
@@ -53,7 +53,8 @@ print OUT join("\t","FusionName","LeftGene","RightGene","LefttBreakpoint",
"RightBreakpoint","LeftStrand","RightStrand","RNAReads",
"DNAReads"),"\n";
print OAS join("\t","FusionName","LeftGene","LefttBreakpoint","LeftGeneExons","LeftStrand",
- "RightGene","RightBreakpoint","RightGeneExons","RightStrand","RNAReads","DNAReads"),"\n";
+ "RightGene","RightBreakpoint","RightGeneExons","RightStrand",
+ "RNAReads","DNAReads","FusionType","Annot"),"\n";
print OUTIR join("\t","Hugo_Symbol","Entrez_Gene_Id","Center","Tumor_Sample_Barcode",
"Fusion","DNA_support","RNA_support","Method","Frame"),"\n";
--
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