diff --git a/genect_rnaseq/statanal.sh b/genect_rnaseq/statanal.sh index fd36f0f19d745ac77bb35cec936cbdb4a6100664..23efcf1a0d71687ffbee469dec947b63228cbaeb 100644 --- a/genect_rnaseq/statanal.sh +++ b/genect_rnaseq/statanal.sh @@ -41,7 +41,8 @@ else module load R/3.2.1-intel Rscript $baseDir/dea.R Rscript $baseDir/build_ballgown.R *_stringtie - if [[ -n `ls *.edgeR.txt` ]] + edgeR=`find ./ -name *.edgeR.txt` + if [[ -n $edgeR ]] then perl $baseDir/concat_edgeR.pl *.edgeR.txt fi