From 0f5e4dca5c3985a7f7b0d409edb5140715b925b8 Mon Sep 17 00:00:00 2001
From: Brandi Cantarel <brandi.cantarel@utsouthwestern.edu>
Date: Thu, 24 Jan 2019 14:28:24 -0600
Subject: [PATCH] update fpkm
---
genect_rnaseq/concat_fpkm.pl | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/genect_rnaseq/concat_fpkm.pl b/genect_rnaseq/concat_fpkm.pl
index 9bda30a..c3be1e3 100755
--- a/genect_rnaseq/concat_fpkm.pl
+++ b/genect_rnaseq/concat_fpkm.pl
@@ -32,7 +32,8 @@ foreach $file (@files) {
while (my $line = <IN>) {
chomp($line);
my ($ensid,$gene,$chr,$strand,$start,$end,$cov,$fpkm,$tmp) = split(/\t/,$line);
- $cts{$ensid}{$sample} = $fpkm;
+ my ($ens,$version) = split(/\./,$ensid);
+ $cts{$ens}{$sample} = $fpkm;
}
close IN;
}
--
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