params { refSource = "aws" } workDir = 's3://gudmap-rbk.output/work' aws.client.storageEncryption = 'AES256' aws { region = 'us-east-2' batch { cliPath = '/home/ec2-user/miniconda/bin/aws' } } process { executor = 'awsbatch' cpus = 1 memory = '1 GB' withName: trackStart { cpus = 1 memory = '1 GB' } withName: getBag { cpus = 1 memory = '1 GB' } withName: getData { cpus = 1 memory = '1 GB' } withName: parseMetadata { cpus = 15 memory = '1 GB' } withName: trimData { cpus = 20 memory = '2 GB' } withName: getRefInfer { cpus = 1 memory = '1 GB' } withName: downsampleData { cpus = 1 memory = '1 GB' } withName: alignSampleData { cpus = 50 memory = '5 GB' } withName: inferMetadata { cpus = 5 memory = '1 GB' } withName: getRef { cpus = 1 memory = '1 GB' } withName: alignData { cpus = 50 memory = '10 GB' } withName: dedupData { cpus = 5 memory = '20 GB' } withName: countData { cpus = 2 memory = '5 GB' } withName: makeBigWig { cpus = 15 memory = '5 GB' } withName: fastqc { cpus = 1 memory = '1 GB' } withName: dataQC { cpus = 15 memory = '2 GB' } withName: aggrQC { cpus = 2 memory = '1 GB' } withName: outputBag { cpus = 1 memory = '1 GB' } withName: uploadInputBag { cpus = 1 memory = '1 GB' } withName: uploadExecutionRun { cpus = 1 memory = '1 GB' } }