id: 'software_versions' section_name: 'Software Versions' section_href: 'https://git.biohpc.swmed.edu/gudmap_rbk/rna-seq/-/blob/78-tool_version/docs/RNA-Seq%20Pipeline%20Design%20Process%20Table.pdf' plot_type: 'html' description: 'are collected for pipeline version.' data: | <dl class="dl-horizontal"> <dt>Python</dt><dd>v3.8.3</dd> <dt>DERIVA</dt><dd>v1.3.0</dd> <dt>BDBag</dt><dd>v1.5.6</dd> <dt>RSeQC</dt><dd>v4.0.0</dd> <dt>Trim Galore!</dt><dd>v0.6.4_dev</dd> <dt>HISAT2</dt><dd>v2.2.1</dd> <dt>Samtools</dt><dd>v1.11</dd> <dt>picard (MarkDuplicates)</dt><dd>v2.23.9</dd> <dt>featureCounts</dt><dd>v2.0.1</dd> <dt>R</dt><dd>v4.0.3</dd> <dt>deepTools</dt><dd>v3.5.0</dd> <dt>FastQC</dt><dd>v0.11.9</dd> <dt>MultiQC</dt><dd>v1.9</dd> <dt>Pipeline Version</dt><dd>v1.0.0</dd> </dl>