Closed
Milestone
1.0.0
Milestone ID: 110
Unstarted Issues (open and unassigned)
0
Ongoing Issues (open and assigned)
0
Completed Issues (closed)
21
- Add median TIN to mRNA_QC table
- Add nextflow logging/report/trace to nextflow.config
- Add tool version badges
- Add query for number of replicates run/passed/failed on datahub for badge
- Move splitStudy script to snippets and change embedding in readme
- Make a snippet for GUDMAP upload of references
- Embed reference build snippet in readme
- Recreate references using new snippet
- Move references hosting to GUDMAP
- Upload on error
- Output tool version to report in multiqc
- Add an option to not upload
- On Fail
- Add details to outputBag
- Detect error in inferMetadata for tracking
- On Error: email
- Move Consistency checks to pytest
- Put reference building script into Snippets
- Make production versions of docker containers for GUDMAP/RBK
- Move references to GUDMAP/RBK
- process_derivaUpload
