Issues · GUDMAP_RBK / RNA-seq

New issue

Detect truncation errors of fastq's

#98 · created Jan 12, 2021 by Gervaise Henry v2.0.0 To Do pipeline
- CLOSED
- 0
updated Apr 20, 2021
RIDs that failed

#99 · created Jan 12, 2021 by Venkat Malladi Doing analysis
- CLOSED
- 0
updated Apr 16, 2021
Node Failures

#116 · created Jan 27, 2021 by Gervaise Henry
- CLOSED
- 0
updated Apr 16, 2021
Mouse Experiment ID's to be run 5 of 5 tasks completed

#83 · created Nov 10, 2020 by Venkat Malladi Doing analysis
- CLOSED
- 0
updated Apr 16, 2021
Legeacy Mouse ID's to be be run 0 of 19 tasks completed

#121 · created Feb 03, 2021 by Venkat Malladi Doing analysis
- CLOSED
- 0
updated Apr 16, 2021
Human Experiment ID's to be run 13 of 13 tasks completed

#82 · created Nov 10, 2020 by Venkat Malladi Doing analysis
- CLOSED
- 0
updated Apr 16, 2021
Legacy Human Experiment to be run 1 of 2 tasks completed

#120 · created Feb 03, 2021 by Venkat Malladi Doing analysis
- CLOSED
- 0
updated Apr 16, 2021
Fix datahub fetch of references

#122 · created Feb 10, 2021 by Gervaise Henry v2.0.0 To Do bug
- CLOSED
- 1
- 0
updated Mar 05, 2021
Change to single getRef process

#49 · created Apr 22, 2020 by Gervaise Henry DSL2 To Do discussion enhancement pipeline
- CLOSED
- 1
- 2
updated Mar 05, 2021
Ambiguous species & fastq structure submits blank status detail

#118 · created Feb 02, 2021 by Gervaise Henry v2.0.0 To Do bug confirmed data-hub pipeline
- CLOSED
- 1
- 0
updated Feb 07, 2021
Fastq files don't match expected pattern

#119 · created Feb 03, 2021 by Venkat Malladi v2.0.0 Rejected
- CLOSED
- 1
updated Feb 03, 2021
Change Single Read to Single End for submitted endness

#110 · created Jan 20, 2021 by Gervaise Henry v2.0.0 Test critical data-hub pipeline
- CLOSED
- 2
- 2
updated Feb 01, 2021
Sequencing_Type column change to Experiment_Type

#114 · created Jan 25, 2021 by Gervaise Henry v2.0.0 Test confirmed critical data-hub pipeline
- CLOSED
- 1
- 0
updated Feb 01, 2021
Has_Strand_Specific_Information changed to Strandedness

#115 · created Jan 25, 2021 by Gervaise Henry v2.0.0 Test confirmed critical data-hub pipeline
- CLOSED
- 1
- 0
updated Feb 01, 2021
Change yes/no metadata to bool

#70 · created Aug 17, 2020 by Gervaise Henry v2.0.0 Test confirmed critical data-hub pipeline
- CLOSED
- 2
- 2
updated Feb 01, 2021
Create blank mRNA_QC on matadata/fastq error

#111 · created Jan 25, 2021 by Gervaise Henry v2.0.0 Test data-hub pipeline
- CLOSED
- 1
- 0
updated Feb 01, 2021
New logic for outputBag upload

#112 · created Jan 25, 2021 by Gervaise Henry v2.0.0 Test data-hub pipeline
- CLOSED
- 1
- 4
updated Feb 01, 2021
Add overrides for other metadata

#100 · created Jan 12, 2021 by Gervaise Henry v2.0.0 Test pipeline
- CLOSED
- 1
- 0
updated Feb 01, 2021
Add param option for tracking db uploads

#95 · created Jan 11, 2021 by Gervaise Henry v2.0.0 Test pipeline tracking
- CLOSED
- 1
- 0
updated Feb 01, 2021
Add forward/reverse as expected vals for stranded

#113 · created Jan 25, 2021 by Gervaise Henry v2.0.0 Doing confirmed critical data-hub pipeline
- CLOSED
- 1
updated Jan 25, 2021