Issues · GUDMAP_RBK / RNA-seq

New issue

Fix endness force

#135 · created Jul 30, 2021 by Gervaise Henry v2.0.1 Doing bug critical pipeline
- CLOSED
- 2
- 0
updated Jul 31, 2021
Add override (force) for seq-type

#131 · created Jul 07, 2021 by Gervaise Henry v2.0.1 7 Doing confirmed critical enhancement pipeline
- CLOSED
- 1
- 0
updated Jul 26, 2021
Move seqwho reference

#127 · created May 07, 2021 by Gervaise Henry v2.0.1 5 Doing critical pipeline
- CLOSED
- 1
- 1
updated Jul 26, 2021
Change the CI unit test RIDs

#133 · created Jul 19, 2021 by Gervaise Henry v2.0.1 CI/CD bug
- CLOSED
- 1
- 1
updated Jul 25, 2021
samtools sort: couldn't allocate memory for bam_mem

#108 · created Jan 18, 2021 by Gervaise Henry v2.0.0 bug critical
- CLOSED
- 1
- 1
updated Jul 25, 2021
Inferred spelt wrong

#125 · created Apr 20, 2021 by Gervaise Henry v2.0.1 1 bug pipeline
- CLOSED
- 1
- 0
updated Jul 25, 2021
Fix datahub fetch of references

#122 · created Feb 10, 2021 by Gervaise Henry v2.0.0 bug
- CLOSED
- 1
- 0
updated Jul 25, 2021
Legacy Human Experiment to be run 1 of 2 tasks completed

#120 · created Feb 03, 2021 by Venkat Malladi analysis
- CLOSED
- 0
updated Jul 25, 2021
Legeacy Mouse ID's to be be run 0 of 19 tasks completed

#121 · created Feb 03, 2021 by Venkat Malladi analysis
- CLOSED
- 0
updated Jul 25, 2021
bdbag cookie link missing

#132 · created Jul 10, 2021 by Gervaise Henry v2.0.1 10 bug critical pipeline
- CLOSED
- 1
- 0
updated Jul 25, 2021
bam file in fastq file

#107 · created Jan 15, 2021 by Venkat Malladi v2.0.0 bug
- CLOSED
- 1
- 1
updated Jul 25, 2021
fastqc task error check

#129 · created Jul 05, 2021 by Gervaise Henry v2.0.1 10 bug pipeline
- CLOSED
- 1
- 0
updated Jul 25, 2021
Files not matching current fastq naming convention

#109 · created Jan 19, 2021 by Gervaise Henry v2.0.0 bug
- CLOSED
- 1
- 0
updated Jul 25, 2021
Add forward/reverse as expected vals for stranded

#113 · created Jan 25, 2021 by Gervaise Henry v2.0.0 confirmed critical data-hub pipeline
- CLOSED
- 1
updated Jul 25, 2021
Ambiguous species & fastq structure submits blank status detail

#118 · created Feb 02, 2021 by Gervaise Henry v2.0.0 bug confirmed data-hub pipeline
- CLOSED
- 1
- 0
updated Jul 25, 2021
Server changing... need to change .insert calls

#134 · created Jul 20, 2021 by Gervaise Henry v2.0.1 confirmed critical data-hub pipeline
- CLOSED
- 1
- 0
updated Jul 25, 2021
Detect truncation errors of fastq's

#98 · created Jan 12, 2021 by Gervaise Henry v2.0.0 To Do pipeline
- CLOSED
- 0
updated Apr 20, 2021
RIDs that failed

#99 · created Jan 12, 2021 by Venkat Malladi Doing analysis
- CLOSED
- 0
updated Apr 16, 2021
Node Failures

#116 · created Jan 27, 2021 by Gervaise Henry
- CLOSED
- 0
updated Apr 16, 2021
Mouse Experiment ID's to be run 5 of 5 tasks completed

#83 · created Nov 10, 2020 by Venkat Malladi Doing analysis
- CLOSED
- 0
updated Apr 16, 2021