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GUDMAP_RBK
RNA-seq
Issues
Open
12
Closed
115
All
127
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Last updated
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Blocking
Move seqwho reference
#127
· created
May 07, 2021
by
Gervaise Henry
v2.x.x
To Do
critical
0
updated
May 07, 2021
Move uploadInputBag to occur right before uploadExecutionRun
#126
· created
Apr 22, 2021
by
Gervaise Henry
v2.x.x
To Do
suggestion
0
updated
Apr 22, 2021
Inferred spelt wrong
#125
· created
Apr 20, 2021
by
Gervaise Henry
v2.x.x
To Do
bug
0
updated
Apr 20, 2021
Some seqwho seq-type inferences have commas which mess up error descriptions
#124
· created
Apr 20, 2021
by
Gervaise Henry
v2.x.x
To Do
bug
0
updated
Apr 20, 2021
Handle image caching in CI better
#123
· created
Mar 05, 2021
by
Gervaise Henry
FUTURE Version
CI/CD
To Do
0
updated
Mar 05, 2021
Fix datahub fetch of references
#122
· created
Feb 10, 2021
by
Gervaise Henry
v2.0.0
To Do
bug
CLOSED
1
0
updated
Mar 05, 2021
Legeacy Mouse ID's to be be run
0 of 19 tasks completed
#121
· created
Feb 03, 2021
by
Venkat Malladi
Doing
analysis
CLOSED
0
updated
Apr 16, 2021
Legacy Human Experiment to be run
1 of 2 tasks completed
#120
· created
Feb 03, 2021
by
Venkat Malladi
Doing
analysis
CLOSED
0
updated
Apr 16, 2021
Fastq files don't match expected pattern
#119
· created
Feb 03, 2021
by
Venkat Malladi
v2.0.0
Rejected
CLOSED
1
updated
Feb 03, 2021
Ambiguous species & fastq structure submits blank status detail
#118
· created
Feb 02, 2021
by
Gervaise Henry
v2.0.0
To Do
bug
confirmed
data-hub
pipeline
CLOSED
1
0
updated
Feb 07, 2021
Update $31 snippet to use bash opt-args
#117
· created
Jan 30, 2021
by
Gervaise Henry
FUTURE Version
To Do
0
updated
Mar 19, 2021
Node Failures
#116
· created
Jan 27, 2021
by
Gervaise Henry
CLOSED
0
updated
Apr 16, 2021
Has_Strand_Specific_Information changed to Strandedness
#115
· created
Jan 25, 2021
by
Gervaise Henry
v2.0.0
Test
confirmed
critical
data-hub
pipeline
CLOSED
1
0
updated
Feb 01, 2021
Sequencing_Type column change to Experiment_Type
#114
· created
Jan 25, 2021
by
Gervaise Henry
v2.0.0
Test
confirmed
critical
data-hub
pipeline
CLOSED
1
0
updated
Feb 01, 2021
Add forward/reverse as expected vals for stranded
#113
· created
Jan 25, 2021
by
Gervaise Henry
v2.0.0
Doing
confirmed
critical
data-hub
pipeline
CLOSED
1
updated
Jan 25, 2021
New logic for outputBag upload
#112
· created
Jan 25, 2021
by
Gervaise Henry
v2.0.0
Test
data-hub
pipeline
CLOSED
1
4
updated
Feb 01, 2021
Create blank mRNA_QC on matadata/fastq error
#111
· created
Jan 25, 2021
by
Gervaise Henry
v2.0.0
Test
data-hub
pipeline
CLOSED
1
0
updated
Feb 01, 2021
Change Single Read to Single End for submitted endness
#110
· created
Jan 20, 2021
by
Gervaise Henry
v2.0.0
Test
critical
data-hub
pipeline
CLOSED
2
2
updated
Feb 01, 2021
Files not matching current fastq naming convention
#109
· created
Jan 19, 2021
by
Gervaise Henry
v2.0.0
Doing
bug
CLOSED
1
0
updated
Jan 20, 2021
samtools sort: couldn't allocate memory for bam_mem
#108
· created
Jan 18, 2021
by
Gervaise Henry
v2.0.0
Doing
bug
critical
CLOSED
1
1
updated
Jan 20, 2021
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