process_count
Purpose: Count features
Input:
- dedup.bam
- pe/se
- stranded
- reference GTF
Outputs for later processes:
- count
- FPKM/TPM (@ghenry
Process:
- Need to figure out...
Tools:
- RSEM? See @venkat.malladi below...
- Switch to featureCounts
Purpose: Count features
Input:
Outputs for later processes:
Process:
Tools: