Some seqwho seq-type inferences have commas which mess up error descriptions
Summary
chip,dnase seq-type inference from seqwho's comma messes with execution run status description output to trunkate
Steps to reproduce
run Q-Y5E6
Observed bug behavior
Infered sequencing type does not match for R1 and R2: Infered R1 = chip and infered R2 = chip
Expected behavior
Infered sequencing type does not match for R1 and R2: Infered R1 = chip and infered R2 = chip,dnase
Relevant logs and/or screenshots
Potential fixes
20210420:
cbennett 9:50 PM
@Gervaise no that's all that will output with a comma. I can change that for you to be something else?
Gervaise:face_with_cowboy_hat: 9:51 PM
...that would be awesome for me... then I wouldn't have to modify my pipeline... just the docker container... hehe
cbennett 9:51 PM
Yeah no worries. I'll push it out as a minor update
Gervaise:face_with_cowboy_hat: 9:51 PM
awesome... let me know when...
Venkat Malladi 9:52 PM
I missed it with such a big code merge
9:52
Sorry @Gervaise
cbennett 9:52 PM
I've added a reminder to my calendar. Expect end of week\
ONCE SEQWHO VERSIONED (EXPECT BY 20210425) VERSION DOCKER CONTAINER AND CAN USE IN PIPELINE