From fe197fce43bc279852e41cc1d5f3763f49e02bee Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Sun, 13 Sep 2020 22:05:40 -0500
Subject: [PATCH] Remove collect for getRefInfer
---
workflow/rna-seq.nf | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf
index 04bcfa9..b7cf322 100644
--- a/workflow/rna-seq.nf
+++ b/workflow/rna-seq.nf
@@ -378,13 +378,13 @@ fastqsTrim.into {
/*
* getRefInfer: dowloads appropriate reference for metadata inference
-*/
+*/
process getRefInfer {
tag "${refName}"
input:
- path credential, stageAs: "credential.json" from deriva_getRefInfer.collect()
- path script_refDataInfer.collect()
+ path credential, stageAs: "credential.json" from deriva_getRefInfer
+ path script_refDataInfer
val refName from referenceInfer
output:
--
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