diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 4e8858b312e2af1a97eb9ce7ba9fb105f4e0a650..f9d856b431c9690d8c88742eaefcef8a36ab0139 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -285,8 +285,8 @@ uploadInputBag: if [ "${exist}" == "[]" ]; then cookie=$(cat credential.json | grep -A 1 '\"staging.gudmap.org\": {' | grep -o '\"cookie\": \".*\"') && cookie=${cookie:11:-1} && - loc=$(singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' deriva-hatrac-cli --host dev.gudmap.org put ./test.txt /hatrac/resources/rnaseq/pipeline/input_bag/TEST/test.txt --parents) && - rid=$(singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' python3 ./workflow/scripts/uploadInputBag.py -f test.txt -l ${loc} -s ${md5} -b ${size} -n 'This is a test input bag' -o dev.gudmap.org -c ${cookie}) && + loc=$(singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' deriva-hatrac-cli --host staging.gudmap.org put ./test.txt /hatrac/resources/rnaseq/pipeline/input_bag/TEST/test.txt --parents) && + rid=$(singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' python3 ./workflow/scripts/uploadInputBag.py -f test.txt -l ${loc} -s ${md5} -b ${size} -n 'This is a test input bag' -o staging.gudmap.org -c ${cookie}) && echo ${rid} test input bag created else rid=$(echo ${exist} | grep -o '\"RID\":\".*\",\"RCT') &&