From fb226a9890e42822440d62617bbfbff03c7e42fa Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Wed, 6 Jan 2021 09:52:12 -0600
Subject: [PATCH] Fix align sample combine
---
workflow/rna-seq.nf | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf
index 1244881..d8a6be1 100644
--- a/workflow/rna-seq.nf
+++ b/workflow/rna-seq.nf
@@ -701,7 +701,7 @@ process downsampleData {
}
// Replicate the dowsampled fastq's and attatched to the references
-inferInput = endsManual_alignSampleData.combine(refInfer.combine(fastqs1Sample.collect().combine(fastqs2Sample.collect().combine(fastqCountError_alignSampleData.combine(val fastqReadError_alignSampleData)))))
+inferInput = endsManual_alignSampleData.combine(refInfer.combine(fastqs1Sample.collect().combine(fastqs2Sample.collect().combine(fastqCountError_alignSampleData.combine(fastqReadError_alignSampleData)))))
/*
* alignSampleData: aligns the downsampled reads to a reference database
--
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