From fac6cc3705b1d872f26051de39591bd98f6382f6 Mon Sep 17 00:00:00 2001
From: Jeremy Mathews <Jeremy.Mathews@utsouthwestern.edu>
Date: Mon, 25 Nov 2019 12:34:00 -0600
Subject: [PATCH] double quote?
---
.gitlab-ci.yml | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 376b966..2d54ae9 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -12,6 +12,6 @@ unit:
stage: unit
script:
- singularity run 'docker://bicf/bdbag:1.0' bdbag --materialize ./test_data/File_Q-Y53P.zip
- - if [ $(singularity run 'docker://bicf/bdbag:1.0' bdbag --validate completeness ./test_data/File_Q-Y53P/ 2>&1 | tail -3 | head -n 1 | cut -c 34-) != 'The directory ./test_data/File_Q-Y53P is a valid bag structure' ]; then exit 21; fi;
- - if [ $(singularity run 'docker://bicf/bdbag:1.0' bdbag --validate full ./test_data/File_Q-Y53P/ 2>&1 | tail -3 | head -n 1 | cut -c 34-) != 'Bag ./test_data/File_Q-Y53P is valid' ]; then exit 21; fi;
+ - if [ $(singularity run 'docker://bicf/bdbag:1.0' bdbag --validate completeness ./test_data/File_Q-Y53P/ 2>&1 | tail -3 | head -n 1 | cut -c 34-) != "The directory ./test_data/File_Q-Y53P is a valid bag structure" ]; then exit 21; fi;
+ - if [ $(singularity run 'docker://bicf/bdbag:1.0' bdbag --validate full ./test_data/File_Q-Y53P/ 2>&1 | tail -3 | head -n 1 | cut -c 34-) != "Bag ./test_data/File_Q-Y53P is valid" ]; then exit 21; fi;
- if [ $(md5sum test_data/File_Q-Y53P/data/assets/Study/Q-Y4H0/Experiment/Q-Y4BY/Replicate/Q-Y5F8/hMARIS_SIX2+_RiboDep#1.gene.rpkm.txt | awk '{ print $1 }') != $(cat test_data/File_Q-Y53P/data/File.csv | cut -d ',' -f10 | tail -1) ]; then exit 21; fi;
--
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