diff --git a/workflow/conf/aws.config b/conf/aws.config
similarity index 100%
rename from workflow/conf/aws.config
rename to conf/aws.config
diff --git a/workflow/conf/biohpc.config b/conf/biohpc.config
similarity index 100%
rename from workflow/conf/biohpc.config
rename to conf/biohpc.config
diff --git a/workflow/conf/biohpc_max.config b/conf/biohpc_max.config
similarity index 100%
rename from workflow/conf/biohpc_max.config
rename to conf/biohpc_max.config
diff --git a/workflow/conf/ondemand.config b/conf/ondemand.config
similarity index 100%
rename from workflow/conf/ondemand.config
rename to conf/ondemand.config
diff --git a/workflow/conf/spot.config b/conf/spot.config
similarity index 100%
rename from workflow/conf/spot.config
rename to conf/spot.config
diff --git a/workflow/nextflow.config b/nextflow.config
similarity index 100%
rename from workflow/nextflow.config
rename to nextflow.config
diff --git a/workflow/rna-seq.nf b/rna-seq.nf
similarity index 100%
rename from workflow/rna-seq.nf
rename to rna-seq.nf