diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf index 93ff65c89a8b26a113b67387348bf3a1be2dd3b7..1ed7d14712c0da90eca6644a5f40a3325cfffaf4 100644 --- a/workflow/rna-seq.nf +++ b/workflow/rna-seq.nf @@ -1876,9 +1876,8 @@ process aggrQC { multiqc -c ${multiqcConfig} . -n ${repRID}.multiqc.html cp ${repRID}.multiqc_data/multiqc_data.json ${repRID}.multiqc_data.json - rpt=`cat ${repRID}.multiqc_data.json` curl -H 'Content-Type: application/json' -X PUT -d \ - \${rpt} \ + @./${repRID}.multiqc_data.json \ "https://9ouc12dkwb.execute-api.us-east-2.amazonaws.com/prod/db/qc" """ }