From f8ab64d0be6380209f5a44db1e2d8e839a9e6bac Mon Sep 17 00:00:00 2001
From: Jonathan Gesell <jonathan.gesell@utsouthwestern.edu>
Date: Fri, 27 Mar 2020 11:01:47 -0500
Subject: [PATCH] Update test_dedupReads.py
---
workflow/tests/test_dedupReads.py | 12 ++++++------
1 file changed, 6 insertions(+), 6 deletions(-)
diff --git a/workflow/tests/test_dedupReads.py b/workflow/tests/test_dedupReads.py
index 2aaf451..9937083 100644
--- a/workflow/tests/test_dedupReads.py
+++ b/workflow/tests/test_dedupReads.py
@@ -13,9 +13,9 @@ data_output_path = os.path.dirname(os.path.abspath(__file__)) + \
def test_dedupData():
assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA_1M.se.sorted.deduped.bam'))
assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA_1M.se.sorted.deduped.bam.bai'))
- assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA.sorted.deduped.chr1.bam'))
- assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA.sorted.deduped.chr1.bam.bai'))
- assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA.sorted.deduped.chr2.bam'))
- assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA.sorted.deduped.chr2.bam.bai'))
- assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA.sorted.deduped.chr8.bam'))
- assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA.sorted.deduped.chr8.bam.bai'))
\ No newline at end of file
+ assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA.sorted.deduped.chrNC_000001.11.bam'))
+ assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA.sorted.deduped.chrNC_000001.11.bam.bai'))
+ assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA.sorted.deduped.chrNC_000002.12.bam'))
+ assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA.sorted.deduped.chrNC_000002.12.bam.bai'))
+ assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA.sorted.deduped.chrNC_000019.10.bam'))
+ assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA.sorted.deduped.chrNC_000019.10.bam.bai'))
\ No newline at end of file
--
GitLab