From f83a3d8cb45d79f3d71e1cf2e275809e64841265 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Wed, 20 Jan 2021 01:17:27 -0600
Subject: [PATCH] Add unexpected meta and fastq structure error ci integration
tests
---
.gitlab-ci.yml | 30 ++++++++++++++++++++++++++++++
1 file changed, 30 insertions(+)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index d7fcaf6..888e01c 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -749,6 +749,36 @@ failMismatchR1R2:
when:
- always
+failUnexpectedMeta:
+ stage: integration
+ only: [merge_requests]
+ except:
+ variables:
+ - $CI_MERGE_REQUEST_TARGET_BRANCH_NAME =~ /master/
+ script:
+ - hostname
+ - ulimit -a
+ - nextflow -q run ./workflow/rna-seq.nf --deriva ./test_data/auth/credential.json --bdbag ./test_data/auth/cookies.txt --repRID 14-3R4R --source staging --upload true -with-dag dag.png --dev false --ci true
+ retry:
+ max: 0
+ when:
+ - always
+
+failFileStructure:
+ stage: integration
+ only: [merge_requests]
+ except:
+ variables:
+ - $CI_MERGE_REQUEST_TARGET_BRANCH_NAME =~ /master/
+ script:
+ - hostname
+ - ulimit -a
+ - nextflow -q run ./workflow/rna-seq.nf --deriva ./test_data/auth/credential.json --bdbag ./test_data/auth/cookies.txt --repRID Q-Y5HT --source staging --upload true -with-dag dag.png --dev false --ci true
+ retry:
+ max: 0
+ when:
+ - always
+
override_inputBag:
stage: integration
only: [merge_requests]
--
GitLab