diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index d7fcaf6d4b8c6d22eec63ab2c43507ae675f6c0f..888e01cd1df9c326dc1781560449736bf8d7e583 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -749,6 +749,36 @@ failMismatchR1R2: when: - always +failUnexpectedMeta: + stage: integration + only: [merge_requests] + except: + variables: + - $CI_MERGE_REQUEST_TARGET_BRANCH_NAME =~ /master/ + script: + - hostname + - ulimit -a + - nextflow -q run ./workflow/rna-seq.nf --deriva ./test_data/auth/credential.json --bdbag ./test_data/auth/cookies.txt --repRID 14-3R4R --source staging --upload true -with-dag dag.png --dev false --ci true + retry: + max: 0 + when: + - always + +failFileStructure: + stage: integration + only: [merge_requests] + except: + variables: + - $CI_MERGE_REQUEST_TARGET_BRANCH_NAME =~ /master/ + script: + - hostname + - ulimit -a + - nextflow -q run ./workflow/rna-seq.nf --deriva ./test_data/auth/credential.json --bdbag ./test_data/auth/cookies.txt --repRID Q-Y5HT --source staging --upload true -with-dag dag.png --dev false --ci true + retry: + max: 0 + when: + - always + override_inputBag: stage: integration only: [merge_requests]