From f313623232a28864535f9aa84fad6129fed13830 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Mon, 28 Dec 2020 12:49:42 -0600
Subject: [PATCH] Try renaming qc rid variable in upload qc ci unit
---
.gitlab-ci.yml | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 85433d0..83f5587 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -338,8 +338,8 @@ uploadQC:
done
echo all old mRNA QC RIDs deleted
fi
- rid=$(singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' python3 ./workflow/scripts/uploadQC.py -r 17-BTFJ -e 17-BTG4 -p "Single Read" -s forward -l 35 -w 5 -f 1 -n "This is a test mRNA QC" -o staging.gudmap.org -c ${cookie} -u F) &&
- echo ${rid} test mRNA QC created
+ qcrid=$(singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' python3 ./workflow/scripts/uploadQC.py -r 17-BTFJ -e 17-BTG4 -p "Single Read" -s forward -l 35 -w 5 -f 1 -n "This is a test mRNA QC" -o staging.gudmap.org -c ${cookie} -u F) &&
+ echo ${qcrid} test mRNA QC created
uploadProcessedFile:
stage: unit
--
GitLab