diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf index 0747219bb33f9feb71476ce5c709e20acf16268e..fb7158f9272d8731a98b6f7a4eb74bd03fe8b11b 100644 --- a/workflow/rna-seq.nf +++ b/workflow/rna-seq.nf @@ -2317,13 +2317,13 @@ process failPreExecutionRun_species { echo \${exist} >> ${repRID}.failPreExecutionRun_species.log if [ "\${exist}" == "[]" ] then - rid=\$(python3 ${script_uploadExecutionRun_failPreExecutionRun} -r ${repRID} -w \${workflow} -g \${genome} -i ${inputBagRID} -s Error -d "\${errorDetails}" -o ${source} -c \${cookie} -u F) + rid=\$(python3 ${script_uploadExecutionRun} -r ${repRID} -w \${workflow} -g \${genome} -i ${inputBagRID} -s Error -d "\${errorDetails}" -o ${source} -c \${cookie} -u F) echo LOG: execution run RID uploaded - \${rid} >> ${repRID}.failPreExecutionRun_species.log else rid=\$(echo \${exist} | grep -o '\\"RID\\":\\".*\\",\\"RCT') rid=\${rid:7:-6} echo \${rid} >> ${repRID}.failPreExecutionRun_species.log - executionRun_rid==\$(python3 ${script_uploadExecutionRun_failPreExecutionRun} -r ${repRID} -w \${workflow} -g \${genome} -i ${inputBagRID} -s Error -d "\${errorDetails}" -o ${source} -c \${cookie} -u \${rid}) + executionRun_rid==\$(python3 ${script_uploadExecutionRun} -r ${repRID} -w \${workflow} -g \${genome} -i ${inputBagRID} -s Error -d "\${errorDetails}" -o ${source} -c \${cookie} -u \${rid}) echo LOG: execution run RID updated - \${executionRun_rid} >> ${repRID}.failPreExecutionRun_species.log fi