From ecc08451cc7d29f02da480f7efc9a80eeaffc0ef Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Thu, 30 Jul 2020 17:31:40 -0500
Subject: [PATCH] Setup dummy se conssistency test with cache dependencies
---
.gitlab-ci.yml | 20 +++++++++++++++++---
1 file changed, 17 insertions(+), 3 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 396e683..cd29ced 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -132,17 +132,20 @@ integration_se:
script:
- hostname
- ulimit -a
- - nextflow -bg run ./workflow/rna-seq.nf --deriva ./test_data/auth/credential.json --bdbag ./test_data/auth/cookies.txt --repRID 16-1ZX4 --ci true
+ - nextflow -bg run ./workflow/rna-seq.nf --deriva ./test_data/auth/credential.json --bdbag ./test_data/auth/cookies.txt --repRID 16-1ZX4 -with-dag dag.png --ci true
+ - find . -type f -name "multiqc_data.json" -exec cp {} . \;
artifacts:
name: "$CI_JOB_NAME"
when: always
paths:
- dag.png
- output/qc/
+ - 16-1ZX4_multiqc_data.json
expire_in: 7 days
cache:
+ key: se_multiqc_cache
paths:
- - output/qc/
+ - 16-1ZX4_multiqc_data.json
integration_pe:
stage: integration
@@ -150,13 +153,24 @@ integration_pe:
- hostname
- ulimit -a
- nextflow -bg run ./workflow/rna-seq.nf --deriva ./test_data/auth/credential.json --bdbag ./test_data/auth/cookies.txt --repRID Q-Y5JA -with-dag dag.png --ci true
+ - find . -type f -name "multiqc_data.json" -exec cp {} . \;
artifacts:
name: "$CI_JOB_NAME"
when: always
paths:
- dag.png
- output/qc/
+ - Q-Y5JA_multiqc_data.json
expire_in: 7 days
cache:
+ key: pe_multiqc_cache
paths:
- - output/qc/
+ - multiqc_data.json
+
+consistency_se:
+ stage: consistency
+ script:
+ - echo "TEST"
+ cache:
+ key: se_multiqc_cache
+
--
GitLab