diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 396e683c779f54ea871605a7f93a6b6b0d1972a6..cd29ced4c29310e4f26df38592ac6b26566eaf1c 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -132,17 +132,20 @@ integration_se: script: - hostname - ulimit -a - - nextflow -bg run ./workflow/rna-seq.nf --deriva ./test_data/auth/credential.json --bdbag ./test_data/auth/cookies.txt --repRID 16-1ZX4 --ci true + - nextflow -bg run ./workflow/rna-seq.nf --deriva ./test_data/auth/credential.json --bdbag ./test_data/auth/cookies.txt --repRID 16-1ZX4 -with-dag dag.png --ci true + - find . -type f -name "multiqc_data.json" -exec cp {} . \; artifacts: name: "$CI_JOB_NAME" when: always paths: - dag.png - output/qc/ + - 16-1ZX4_multiqc_data.json expire_in: 7 days cache: + key: se_multiqc_cache paths: - - output/qc/ + - 16-1ZX4_multiqc_data.json integration_pe: stage: integration @@ -150,13 +153,24 @@ integration_pe: - hostname - ulimit -a - nextflow -bg run ./workflow/rna-seq.nf --deriva ./test_data/auth/credential.json --bdbag ./test_data/auth/cookies.txt --repRID Q-Y5JA -with-dag dag.png --ci true + - find . -type f -name "multiqc_data.json" -exec cp {} . \; artifacts: name: "$CI_JOB_NAME" when: always paths: - dag.png - output/qc/ + - Q-Y5JA_multiqc_data.json expire_in: 7 days cache: + key: pe_multiqc_cache paths: - - output/qc/ + - multiqc_data.json + +consistency_se: + stage: consistency + script: + - echo "TEST" + cache: + key: se_multiqc_cache +