From eb9e0354d738d63f5f6d2d9916e66f450e7ded1c Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Mon, 11 Jan 2021 13:44:47 -0600
Subject: [PATCH] Add GUDMAP/RBK tracking to trackStart
---
workflow/rna-seq.nf | 12 ++++++++++++
1 file changed, 12 insertions(+)
diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf
index 21a2ace..a98b2d3 100644
--- a/workflow/rna-seq.nf
+++ b/workflow/rna-seq.nf
@@ -129,6 +129,18 @@ process trackStart {
"dev": ${params.dev} \
}' \
"https://xku43pcwnf.execute-api.us-east-1.amazonaws.com/ProdDeploy/pipeline-tracking"
+
+ curl -H 'Content-Type: application/json' -X PUT -d \
+ '{ \
+ "ID": "${workflow.sessionId}",
+ "repRID": "${repRID}",
+ "PipelineVersion": "${workflow.manifest.version}", \
+ "Server": "${params.source}", \
+ "Queued": "NA", \
+ "CheckedOut": "NA", \
+ "Started": "${workflow.start}" \
+ }' \
+ "https://9ouc12dkwb.execute-api.us-east-2.amazonaws.com/prod/db/track"
"""
}
--
GitLab