diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 0a92cf953cfdd8e1835aba630b7965890a33bd6a..79267354761f1d2cd6e388db612773a7e1514709 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -548,7 +548,7 @@ uploadOutputBag: cookie=$(cat credential.json | grep -A 1 '\"staging.gudmap.org\": {' | grep -o '\"cookie\": \".*\"') && cookie=${cookie:11:-1} && loc=$(singularity run ${dir}${derivaImg}_${derivaVar}.sif deriva-hatrac-cli --host staging.gudmap.org put ./test.txt /hatrac/resources/rnaseq/pipeline/output_bag/TEST/test.txt --parents) && - rid=$(singularity run ${dir}${derivaImg}_${derivaVar}.sif python3 ./workflow/scripts/upload_output_bag.py -e ${ci_staging_rid_test_erun} -f test.txt -l ${loc} -s ${md5} -b ${size} -n 'This is a test output bag' -o staging.gudmap.org -c ${cookie}) && + rid=$(singularity run ${dir}${derivaImg}_${derivaVar}.sif python3 ./workflow/scripts/upload_output_bag.py -e ${ci_staging_rid_test_erun} -f test.txt -l ${loc} -s ${md5} -b ${size} -n 'This is a test output bag' -o staging.gudmap.org -c ${cookie}) -u "F" && echo ${rid} test output bag created else rid=$(echo ${exist} | grep -o '\"RID\":\".*\",\"RCT') &&