From e7eaeaa4add418bc89f58f82ec14cfe79cdf767f Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Sun, 19 Jan 2020 01:39:36 -0600
Subject: [PATCH] Fix endsManual
---
workflow/scripts/parseMeta.py | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/workflow/scripts/parseMeta.py b/workflow/scripts/parseMeta.py
index 6ba068d..d2fb8fa 100644
--- a/workflow/scripts/parseMeta.py
+++ b/workflow/scripts/parseMeta.py
@@ -37,9 +37,9 @@ def main():
ends = "uk"
print(ends)
if (args.parameter == "endsManual"):
- if (len(metaFile[metaFile["File_Type"] == "FastQ"].all()) == 1):
+ if (len(metaFile[metaFile["File_Type"] == "FastQ"]) == 1):
endsManual = "se"
- elif (len(metaFile[metaFile["File_Type"] == "FastQ"].all()) == 2):
+ elif (len(metaFile[metaFile["File_Type"] == "FastQ"]) == 2):
endsManual = "pe"
print(endsManual)
if (args.parameter == "stranded"):
--
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