From e79b28af168f82d9c2604340e4173ac088cab36f Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Fri, 5 Mar 2021 17:57:43 -0600
Subject: [PATCH] Fix dnanexus input file loacation
---
docs/nxf_dnanexus-ci-test.json | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/docs/nxf_dnanexus-ci-test.json b/docs/nxf_dnanexus-ci-test.json
index 95760ff..f2a754a 100644
--- a/docs/nxf_dnanexus-ci-test.json
+++ b/docs/nxf_dnanexus-ci-test.json
@@ -1,5 +1,5 @@
{
"pipeline_url": "https://git.biohpc.swmed.edu/gudmap_rbk/rna-seq.git -r env.ci",
- "args": "-profile dnanexus --deriva dx://NextFlow_Prototype:/ci-env/auth/credential.json --bdbag dx://NextFlow_Prototype:/ci-env/auth/cookies.txt --repRID Q-Y5F6 --source staging --upload false --dev false --ci true --track false -with-report dx://NextFlow_Prototype:/ci-env/output/Q-Y5F6_fastqoverride_report.html --refSource datahub --outDir dx://NextFlow_Prototype:ci-env/output/Q-Y5F6_fastqoverride, --fastqsForce dx://NextFlow_Prototype:/ci-env/*.fastq.gz",
+ "args": "-profile dnanexus --deriva dx://NextFlow_Prototype:/ci-env/auth/credential.json --bdbag dx://NextFlow_Prototype:/ci-env/auth/cookies.txt --repRID Q-Y5F6 --source staging --upload false --dev false --ci true --track false -with-report dx://NextFlow_Prototype:/ci-env/output/Q-Y5F6_fastqoverride_report.html --refSource datahub --outDir dx://NextFlow_Prototype:ci-env/output/Q-Y5F6_fastqoverride, --fastqsForce dx://NextFlow_Prototype:/ci-env/input/*.fastq.gz",
"license": "$NXF_XPACK_LICENSE"
}
--
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