From e76f7affc2df36f79998b5db52ce1eb44461eb2a Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Thu, 30 Jul 2020 22:24:12 -0500
Subject: [PATCH] Remove cache dependencies #27
---
.gitlab-ci.yml | 17 ++++-------------
1 file changed, 4 insertions(+), 13 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index e6dac7c..ed6baaf 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -133,18 +133,14 @@ integration_se:
- hostname
- ulimit -a
- nextflow -bg run ./workflow/rna-seq.nf --deriva ./test_data/auth/credential.json --bdbag ./test_data/auth/cookies.txt --repRID 16-1ZX4 -with-dag dag.png --ci true
- - find . -type f -name "multiqc_data.json" -exec cp {} . \;
+ - find . -type f -name "multiqc_data.json" -exec cp {} ./16-1ZX4_multiqc_data.json \;
artifacts:
name: "$CI_JOB_NAME"
when: always
paths:
- - dag.png
- output/qc/
+ - 16-1ZX4_multiqc_data.json
expire_in: 7 days
- cache:
- key: se_multiqc_cache
- paths:
- - multiqc_data.json
integration_pe:
stage: integration
@@ -152,23 +148,18 @@ integration_pe:
- hostname
- ulimit -a
- nextflow -bg run ./workflow/rna-seq.nf --deriva ./test_data/auth/credential.json --bdbag ./test_data/auth/cookies.txt --repRID Q-Y5JA -with-dag dag.png --ci true
- - find . -type f -name "multiqc_data.json" -exec cp {} . \;
+ - find . -type f -name "multiqc_data.json" -exec cp {} ./Q-Y5JA_multiqc_data.json \;
artifacts:
name: "$CI_JOB_NAME"
when: always
paths:
- dag.png
- output/qc/
+ - Q-Y5JA_multiqc_data.json
expire_in: 7 days
- cache:
- key: pe_multiqc_cache
- paths:
- - multiqc_data.json
consistency_se:
stage: consistency
script:
- echo "TEST"
- cache:
- key: se_multiqc_cache
--
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