From ded9c3a1ea3d03a888ac5dc0265df540c9537e21 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Fri, 12 Feb 2021 14:06:53 -0600
Subject: [PATCH] Use predicted name of inputBag zip instead of using ls
---
rna-seq.nf | 3 +--
1 file changed, 1 insertion(+), 2 deletions(-)
diff --git a/rna-seq.nf b/rna-seq.nf
index c4e0e83..da090e6 100644
--- a/rna-seq.nf
+++ b/rna-seq.nf
@@ -211,8 +211,7 @@ process getBag {
deriva-download-cli ${source} --catalog 2 ${replicateExportConfig} . rid=${repRID}
echo -e "LOG: fetched" >> ${repRID}.getBag.log
- name=\$(ls *.zip)
- name=\$(basename \${name} | cut -d "." -f1)
+ name=${repRID}_inputBag.zip
yr=\$(date +'%Y')
mn=\$(date +'%m')
dy=\$(date +'%d')
--
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