From ded770b2262b0304d98cca931541605880f9b293 Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Tue, 10 Nov 2020 11:12:35 -0600
Subject: [PATCH] Fix consistency check for where it is grabbing.
---
workflow/tests/test_consistency.py | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/workflow/tests/test_consistency.py b/workflow/tests/test_consistency.py
index 6188906..81fd637 100644
--- a/workflow/tests/test_consistency.py
+++ b/workflow/tests/test_consistency.py
@@ -18,7 +18,7 @@ def test_consistencySE():
with open(os.path.join(
test_output_path, 'SE_multiqc_data.json')) as f:
assigned_reads_json = json.load(f)
- assigned_reads = assigned_reads_json['report_general_stats_data'][0]['16-1ZX4']['Assigned']
+ assigned_reads = assigned_reads_json['report_general_stats_data'][3]['16-1ZX4']['Assigned']
assert assigned_reads == 7742416
@@ -30,5 +30,5 @@ def test_consistencyPE():
with open(os.path.join(
test_output_path, 'PE_multiqc_data.json')) as f:
assigned_reads_json = json.load(f)
- assigned_reads = assigned_reads_json['report_general_stats_data'][0]['Q-Y5JA']['Assigned']
+ assigned_reads = assigned_reads_json['report_general_stats_data'][3]['Q-Y5JA']['Assigned']
assert assigned_reads == 2599140
--
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