diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf index 41d6f2b2f3d7ab55f44d594e1d75f640a1b13ee2..c7b9cb1ecaf6ce85a641248e706a5c3394336e56 100644 --- a/workflow/rna-seq.nf +++ b/workflow/rna-seq.nf @@ -465,6 +465,7 @@ process getRefInfer { mkdir ${refName}/bed touch ${refName}/bed/temp elif [ ${referenceBase} == "dev.gudmap.org" ] + then mv bed ${refName}/ fi """