diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index bebbb63bd5988530255478a789f86e403d2504f4..e24c6205d07b28fba2bb1705822852db84d54c60 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -338,8 +338,7 @@ uploadQC: done echo all old mRNA QC RIDs deleted fi - rid=$(singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' python3 ./workflow/scripts/uploadQC.py -r 17-BTFJ -e 17-BTG4 -p "Single Read" -s forward -l 35 -1 5 -f 1 -n "This is a test mRNA QC" -o staging.gudmap.org -c ${cookie} -u F) - #qcrid=$(singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' python3 ./workflow/scripts/uploadQC.py -r 17-BTFJ -e 17-BTG4 -p "Single Read" -s forward -l 35 -w 5 -f 1 -n "This is a test mRNA QC" -o staging.gudmap.org -c ${cookie} -u F) && + rid=$(singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' python3 ./workflow/scripts/uploadQC.py -r 17-BTFJ -e 17-BTG4 -p "Single Read" -s forward -l 35 -w 5-1 5 -f 1 -n "This is a test mRNA QC" -o staging.gudmap.org -c ${cookie} -u F) echo ${rid} test mRNA QC created uploadProcessedFile: