From dbfd063c2e82938928c2360f91cecc23a353095d Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Mon, 30 Nov 2020 17:04:19 -0600
Subject: [PATCH] Finalize CI unit uploadInputBag
---
.gitlab-ci.yml | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 8dda5a7..eac3c5f 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -290,7 +290,7 @@ uploadInputBag:
- >
hatrac=$(singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' deriva-hatrac-cli --host dev.gudmap.org ls /hatrac/resources/rnaseq/pipeline/input_bag/ | grep -o /TESTX$)
if [ -z "${hatrac}" ]; then
- singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' deriva-hatrac-cli --host dev.gudmap.org mkdir /hatrac/resources/rnaseq/pipeline/input_bag/TEST
+ singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' deriva-hatrac-cli --host dev.gudmap.org mkdir /hatrac/resources/rnaseq/pipeline/input_bag/TEST &&
echo /hatrac/resources/rnaseq/pipeline/input_bag/TEST created
else
echo /hatrac/resources/rnaseq/pipeline/input_bag/TEST already exists
--
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