From dbdf865f1ea01aa25a233103d4f283329729951f Mon Sep 17 00:00:00 2001 From: Venkat Malladi <venkat.malladi@utsouthwestern.edu> Date: Tue, 28 Jan 2020 07:54:37 -0600 Subject: [PATCH] Update read comparison and decorator --- workflow/tests/test_alignReads.py | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/workflow/tests/test_alignReads.py b/workflow/tests/test_alignReads.py index 66f6a26..c88f5a0 100644 --- a/workflow/tests/test_alignReads.py +++ b/workflow/tests/test_alignReads.py @@ -13,12 +13,13 @@ logs_output_path = os.path.dirname(os.path.abspath(__file__)) + \ @pytest.mark.alignData def test_alignData_se(): assert os.path.exists(os.path.join(data_output_path, '16-1ZX4.unal.gz')) - assert utils.count_lines(os.path.join(data_output_path, '16-1ZX4.unal.gz')) == 3070504 + assert utils.count_lines(os.path.join(data_output_path, '16-1ZX4.unal.gz')) == 3070528 assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA.sorted.bam')) assert utils.count_lines(os.path.join(data_output_path, 'Q-Y5JA.sorted.bam')) == 5805611 assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA.sorted.bai')) assert utils.count_lines(os.path.join(data_output_path, 'Q-Y5JA.sorted.bai')) == 12824 +@pytest.mark.alignData def test_alignData_pe(): assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA.unal.gz')) assert utils.count_lines(os.path.join(data_output_path, 'Q-Y5JA.unal.gz')) == 0 @@ -36,6 +37,7 @@ def test_alignLogs_se(): assert os.path.exists(os.path.join(logs_output_path, '16-1ZX4.align.out')) assert utils.count_lines(os.path.join(logs_output_path, '16-1ZX4.align.out')) == 0 +@pytest.mark.alignLogs def test_alignLogs_pe(): assert os.path.exists(os.path.join(logs_output_path, 'Q-Y5JA.align.err')) assert utils.count_lines(os.path.join(logs_output_path, 'Q-Y5JA.align.err')) == 7 -- GitLab