From daa84862208a31a3a54f24a0e1b0100366698d3f Mon Sep 17 00:00:00 2001
From: Jeremy Mathews <Jeremy.Mathews@utsouthwestern.edu>
Date: Fri, 15 Nov 2019 16:16:10 -0600
Subject: [PATCH] test failure
---
.gitlab-ci.yml | 4 +---
1 file changed, 1 insertion(+), 3 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index c636c93..eae88e9 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -11,9 +11,7 @@ stages:
unit:
stage: unit
script:
+ - singularity run 'docker://bicf/bdbag:1.0' bdbag --validate completeness ./test_data/File_Q-Y53P.zip
- singularity run 'docker://bicf/bdbag:1.0' bdbag --materialize ./test_data/File_Q-Y53P.zip
- singularity run 'docker://bicf/bdbag:1.0' bdbag --validate full ./test_data/File_Q-Y53P/
- - singularity run 'docker://bicf/bdbag:1.0' bdbag --validate completeness ./test_data/File_Q-Y53P/
- - find ./test_data/File_Q-Y53P/ -type f -print0 | xargs -0 md5sum > test.md5
- - md5sum -c test.md5
- if [ $(md5sum test_data/File_Q-Y53P/data/assets/Study/Q-Y4H0/Experiment/Q-Y4BY/Replicate/Q-Y5F8/hMARIS_SIX2+_RiboDep#1.gene.rpkm.txt | awk '{ print $1 }') != $(cat test_data/File_Q-Y53P/data/File.csv | cut -d ',' -f10 | tail -1) ]; then exit; fi;
--
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