diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index c636c933fc2156fe35ffe4131dc4b9440c10bb29..eae88e936863947dc11a70b308db6e4afa77d981 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -11,9 +11,7 @@ stages: unit: stage: unit script: + - singularity run 'docker://bicf/bdbag:1.0' bdbag --validate completeness ./test_data/File_Q-Y53P.zip - singularity run 'docker://bicf/bdbag:1.0' bdbag --materialize ./test_data/File_Q-Y53P.zip - singularity run 'docker://bicf/bdbag:1.0' bdbag --validate full ./test_data/File_Q-Y53P/ - - singularity run 'docker://bicf/bdbag:1.0' bdbag --validate completeness ./test_data/File_Q-Y53P/ - - find ./test_data/File_Q-Y53P/ -type f -print0 | xargs -0 md5sum > test.md5 - - md5sum -c test.md5 - if [ $(md5sum test_data/File_Q-Y53P/data/assets/Study/Q-Y4H0/Experiment/Q-Y4BY/Replicate/Q-Y5F8/hMARIS_SIX2+_RiboDep#1.gene.rpkm.txt | awk '{ print $1 }') != $(cat test_data/File_Q-Y53P/data/File.csv | cut -d ',' -f10 | tail -1) ]; then exit; fi;