diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index ab68733a0d519869537595dd0fda5edab158ccb8..4589f16230fbc137e198d88da86e3da292832c5b 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -11,6 +11,7 @@ stages: - unit - integration - consistency + - override getBag: stage: unit @@ -191,4 +192,18 @@ consistency: - assignedPE.txt - assignedExpectSE.txt - assignedExpectPE.txt + expire_in: 7 days + +inputBag: + stage: override + script: + - hostname + - ulimit -a + - nextflow -q run ./workflow/rna-seq.nf --deriva ./test_data/auth/credential.json --bdbag ./test_data/auth/cookies.txt --repRID Q-Y5JA --inputBagForce test_data/bagit/Replicate_Q-Y5F6.zip --ci true + - find . -type f -name "multiqc_data.json" -exec cp {} ./inputBagOverride_PE_multiqc_data.json \; + artifacts: + name: "$CI_JOB_NAME" + when: always + paths: + - inputBagOverride_PE_multiqc_data.json expire_in: 7 days \ No newline at end of file