From d51028bf292ef3300d46c8c52052add39634b9f0 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Sun, 21 Mar 2021 19:26:47 -0500
Subject: [PATCH] Fix failPreExecutionRun

---
 rna-seq.nf | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/rna-seq.nf b/rna-seq.nf
index 9f4be25..0c58e21 100644
--- a/rna-seq.nf
+++ b/rna-seq.nf
@@ -2717,16 +2717,16 @@ process failPreExecutionRun {
       errorDetails=\$(echo ${fastqCountError_details}"\\n")
     elif [ ${fastqReadError} == true ]
     then
-      errorDetails=\$(echo \$(errorDetails)${fastqReadError_details}"\\n")
+      errorDetails=\$(echo \${errorDetails}${fastqReadError_details}"\\n")
     elif [ ${fastqFileError} == true ]
     then
-      errorDetails=\$(echo \$(errorDetails)${fastqFileError_details}"\\n")
+      errorDetails=\$(echo \${errorDetails}${fastqFileError_details}"\\n")
     elif [ ${seqtypeError} == true ]
     then
-      errorDetails=\$(echo \$(errorDetails)${seqtypeError_details}"\\n")
+      errorDetails=\$(echo \${errorDetails}${seqtypeError_details}"\\n")
     elif [ ${speciesError} == true ]
     then
-      errorDetails=\$(echo \$(errorDetails)${speciesError_details}"\\n")
+      errorDetails=\$(echo \${errorDetails}${speciesError_details}"\\n")
     fi
 
     echo LOG: searching for workflow RID - BICF mRNA ${workflow.manifest.version} >> ${repRID}.failPreExecutionRun.log
-- 
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