From d51028bf292ef3300d46c8c52052add39634b9f0 Mon Sep 17 00:00:00 2001 From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu> Date: Sun, 21 Mar 2021 19:26:47 -0500 Subject: [PATCH] Fix failPreExecutionRun --- rna-seq.nf | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/rna-seq.nf b/rna-seq.nf index 9f4be25..0c58e21 100644 --- a/rna-seq.nf +++ b/rna-seq.nf @@ -2717,16 +2717,16 @@ process failPreExecutionRun { errorDetails=\$(echo ${fastqCountError_details}"\\n") elif [ ${fastqReadError} == true ] then - errorDetails=\$(echo \$(errorDetails)${fastqReadError_details}"\\n") + errorDetails=\$(echo \${errorDetails}${fastqReadError_details}"\\n") elif [ ${fastqFileError} == true ] then - errorDetails=\$(echo \$(errorDetails)${fastqFileError_details}"\\n") + errorDetails=\$(echo \${errorDetails}${fastqFileError_details}"\\n") elif [ ${seqtypeError} == true ] then - errorDetails=\$(echo \$(errorDetails)${seqtypeError_details}"\\n") + errorDetails=\$(echo \${errorDetails}${seqtypeError_details}"\\n") elif [ ${speciesError} == true ] then - errorDetails=\$(echo \$(errorDetails)${speciesError_details}"\\n") + errorDetails=\$(echo \${errorDetails}${speciesError_details}"\\n") fi echo LOG: searching for workflow RID - BICF mRNA ${workflow.manifest.version} >> ${repRID}.failPreExecutionRun.log -- GitLab