From d1192a5ee48c3289ec2fd6c928b9edf56267c4e7 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Wed, 30 Dec 2020 16:05:28 -0600
Subject: [PATCH] Update default running values
---
workflow/rna-seq.nf | 8 +++++---
1 file changed, 5 insertions(+), 3 deletions(-)
diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf
index bd1aee4..3a97735 100644
--- a/workflow/rna-seq.nf
+++ b/workflow/rna-seq.nf
@@ -18,7 +18,7 @@ params.refMoVersion = "38.p6.vM22"
params.refHuVersion = "38.p12.v31"
params.refERCCVersion = "92"
params.outDir = "${baseDir}/../output"
-params.upload = true
+params.upload = false
params.email = ""
@@ -28,6 +28,10 @@ params.inputBagForce = ""
params.fastqsForce = ""
params.speciesForce = ""
+// Define tracking input variables
+params.ci = false
+params.dev = true
+
// Parse input variables
deriva = Channel
@@ -100,8 +104,6 @@ script_deleteEntry_uploadProcessedFile = Channel.fromPath("${baseDir}/scripts/de
/*
* trackStart: track start of pipeline
*/
-params.ci = false
-params.dev = false
process trackStart {
container 'docker://bicf/bicfbase:2.1.0'
script:
--
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