diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf index bd1aee4ea8fda6acce19febbec38e0118ed0079b..3a97735fe88059a99de264e03d798dc5e2410032 100644 --- a/workflow/rna-seq.nf +++ b/workflow/rna-seq.nf @@ -18,7 +18,7 @@ params.refMoVersion = "38.p6.vM22" params.refHuVersion = "38.p12.v31" params.refERCCVersion = "92" params.outDir = "${baseDir}/../output" -params.upload = true +params.upload = false params.email = "" @@ -28,6 +28,10 @@ params.inputBagForce = "" params.fastqsForce = "" params.speciesForce = "" +// Define tracking input variables +params.ci = false +params.dev = true + // Parse input variables deriva = Channel @@ -100,8 +104,6 @@ script_deleteEntry_uploadProcessedFile = Channel.fromPath("${baseDir}/scripts/de /* * trackStart: track start of pipeline */ -params.ci = false -params.dev = false process trackStart { container 'docker://bicf/bicfbase:2.1.0' script: