diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf index b86cae63b7010a553acf9f79571663937f79f201..3abeb1f07328642e0941fd783cc35bf78c80ca6d 100644 --- a/workflow/rna-seq.nf +++ b/workflow/rna-seq.nf @@ -841,7 +841,7 @@ process inferMetadata { fi fi - if [ !\${speciesError} ] && [ "${speciesForce}" = "" ] + if [ !\${speciesError} ] && [ "${speciesForce}" == "" ] then # infer experimental setting from dedup bam echo -e "LOG: infer experimental setting from dedup bam" >> ${repRID}.inferMetadata.log