From cede66a76c2eee231121546afc2c30399c2723fc Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Thu, 17 Dec 2020 16:06:23 -0600
Subject: [PATCH] Use staging for CI uploadExecutionRun
---
.gitlab-ci.yml | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index f6051c0..7ffe35f 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -304,7 +304,7 @@ uploadExecutionRun:
script:
- ln -sfn `readlink -e ./test_data/auth/credential.json` ./credential.json
- >
- exist=$(singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' curl -s https://dev.gudmap.org/ermrest/catalog/2/entity/RNASeq:Execution_Run/Workflow=18-DT5T/Reference_Genome=17-BPD4/Input_Bag=18-MHWC/Replicate=18-MJ3A) &&
+ exist=$(singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' curl -s https://staging.gudmap.org/ermrest/catalog/2/entity/RNASeq:Execution_Run/Workflow=18-DT5T/Reference_Genome=17-BPD4/Input_Bag=18-MHWC/Replicate=18-MJ3A) &&
cookie=$(cat credential.json | grep -A 1 '\"staging.gudmap.org\": {' | grep -o '\"cookie\": \".*\"') &&
cookie=${cookie:11:-1} &&
if [ "${exist}" == "[]" ]; then
--
GitLab