From ce03bbf289705be18ea1eb61a89a9340f06eb933 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Thu, 7 Jan 2021 17:49:21 -0600
Subject: [PATCH] Fix infer with species error
---
workflow/rna-seq.nf | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf
index f76abd0..51f80be 100644
--- a/workflow/rna-seq.nf
+++ b/workflow/rna-seq.nf
@@ -842,7 +842,7 @@ process inferMetadata {
fi
fi
- if !\${speciesError}
+ if [ "\${speciesError}" == false ]
then
# infer experimental setting from dedup bam
echo -e "LOG: infer experimental setting from dedup bam" >> ${repRID}.inferMetadata.log
--
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