diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 5099028400ce9545b4cb04e51be65d8cc0dc386b..579ad46513641a467029bbaae967aa28127a7fea 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -69,7 +69,7 @@ parseMetadata: script: - singularity run 'docker://gudmaprbk/python3:1.0.0' python3 --version > version_python.txt - rep=$(singularity run 'docker://gudmaprbk/python3:1.0.0' python3 ./workflow/scripts/parseMeta.py -r Replicate_RID -m "./test_data/meta/metaTest.csv" -p repRID) - - exp=$(singularity run 'docker://gudmaprbk/python3:' python3 ./workflow/scripts/parseMeta.py -r Replicate_RID -m "./test_data/meta/metaTest.csv" -p expRID) + - exp=$(singularity run 'docker://gudmaprbk/python3:1.0.0' python3 ./workflow/scripts/parseMeta.py -r Replicate_RID -m "./test_data/meta/metaTest.csv" -p expRID) - study=$(singularity run 'docker://gudmaprbk/python3:1.0.0' python3 ./workflow/scripts/parseMeta.py -r Replicate_RID -m "./test_data/meta/metaTest.csv" -p studyRID) - endsMeta=$(singularity run 'docker://gudmaprbk/python3:1.0.0' python3 ./workflow/scripts/parseMeta.py -r Replicate_RID -m "./test_data/meta/metaTest.csv" -p endsMeta) - endsManual=$(singularity run 'docker://gudmaprbk/python3:1.0.0' python3 ./workflow/scripts/parseMeta.py -r Replicate_RID -m "./test_data/meta/metaTest.csv" -p endsManual)