From cc6ffe961a5d2d8b5e7887f2f82b7d7e64bb202d Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Thu, 2 Apr 2020 17:02:02 -0500
Subject: [PATCH] Fix infer.csv output
---
workflow/rna-seq.nf | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf
index 2a8d723..b082b15 100644
--- a/workflow/rna-seq.nf
+++ b/workflow/rna-seq.nf
@@ -521,7 +521,7 @@ process inferMetadata {
set path (inChrBam), path (inChrBai) from dedupChrBam
output:
- path "infer.tsv" into inferedMetadata
+ path "infer.csv" into inferedMetadata
path "${inBam.baseName}.tin.xls" into tin
path "${repRID}.insertSize.inner_distance_freq.txt" optional true into innerDistance
path "${repRID}.rseqc.{out,err}" optional true
--
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