From cb073c1ef8747a65851304121756dc73cba2a846 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Mon, 14 Sep 2020 12:24:08 -0500
Subject: [PATCH] Fix datahub specific bed folder move
---
workflow/rna-seq.nf | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf
index d26b13c..41d6f2b 100644
--- a/workflow/rna-seq.nf
+++ b/workflow/rna-seq.nf
@@ -464,7 +464,7 @@ process getRefInfer {
rm -rf ${refName}/bed
mkdir ${refName}/bed
touch ${refName}/bed/temp
- else
+ elif [ ${referenceBase} == "dev.gudmap.org" ]
mv bed ${refName}/
fi
"""
--
GitLab