diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf
index d26b13c9ede079ed9c1017d4195c6f62b1eaacba..41d6f2b2f3d7ab55f44d594e1d75f640a1b13ee2 100644
--- a/workflow/rna-seq.nf
+++ b/workflow/rna-seq.nf
@@ -464,7 +464,7 @@ process getRefInfer {
       rm -rf ${refName}/bed
       mkdir ${refName}/bed
       touch ${refName}/bed/temp
-    else
+    elif [ ${referenceBase} == "dev.gudmap.org" ]
       mv bed ${refName}/
     fi
     """