From cafc56d2fa4a0be2b3008c0b530e45a6ae621cf3 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Mon, 28 Dec 2020 21:55:07 -0600
Subject: [PATCH] Use updated input bag name
---
workflow/rna-seq.nf | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf
index 00b8c96..3d7222a 100644
--- a/workflow/rna-seq.nf
+++ b/workflow/rna-seq.nf
@@ -241,7 +241,7 @@ process getData {
# bag fetch fastq's only and rename by repRID
echo -e "LOG: fetching replicate bdbag" >> ${repRID}.getData.log
- sh ${script_bdbagFetch} \${replicate::-9} ${repRID}
+ sh ${script_bdbagFetch} \${replicate::-13} ${repRID}
echo -e "LOG: fetched" >> ${repRID}.getData.log
"""
}
--
GitLab