From c99ba0ab3d1cf9c2ddbce96716d0ee278dca8610 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Sat, 8 Aug 2020 21:26:16 -0500
Subject: [PATCH] Add instructions for running from study RID

---
 README.md | 10 ++++++++--
 1 file changed, 8 insertions(+), 2 deletions(-)

diff --git a/README.md b/README.md
index bc12d2c..23b24d8 100644
--- a/README.md
+++ b/README.md
@@ -58,11 +58,17 @@ FULL EXAMPLE:
 nextflow run workflow/rna-seq.nf --deriva ./data/credential.json --bdbag ./data/cookies.txt --repRID Q-Y5JA
 ```
 
+To run a set of replicates from study RID:
+------------------------------------------
+Run in repo root dir:
+* `sh workflow/scripts/splitStudy.sh [studyRID]`
+It will run in parallel in batches of 5 replicatesRID
 
 
-[**CHANGELOG**](https://git.biohpc.swmed.edu/BICF/gudmap_rbk/rna-seq/blob/develop/CHANGELOG.md)
 
----
+<hr>
+[**CHANGELOG**](https://git.biohpc.swmed.edu/BICF/gudmap_rbk/rna-seq/blob/develop/CHANGELOG.md)
+<hr>
 
 Credits
 =======
-- 
GitLab