diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 181be42885356f82fd51e708af6bfda61c6aa7f4..756d280104a02bc1e9937048e9a93330987bf503 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -33,7 +33,7 @@ img_cache: stage: singularity script: - export -p | grep SINGULARITY_CACHEDIR - - cat nextflow.config | grep -oP "container = \K.*" | tr -d "'" | sort | uniq | xargs -P 10 -I {} singularity pull --dir ${dir} 'docker://'{} + - cat nextflow.config | grep -oP "container = \K.*" | tr -d "'" | sort | uniq | xargs -P 10 -I {} singularity pull --dir ${dir} 'docker://'{} 2>&1 collect: stage: versions